MolNFT v1 · #39660 · protein

Crystal structure analysis of NP24-I, a thaumatin-like protein

2I0W · Protein NP24: “Crystal structure analysis of NP24-I, a thaumatin-like protein”. X-ray diffraction, 1 ligand (CL), 1 pocket (best druggability 0.33). MolNFT v1 #39660 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 2I0W
Type: protein
Length: 207 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protein NP24
UniProt: P12670
Ligands: CL
Pockets: 1 · best druggability 0.33

Structure

x-ray diffraction · 1 distinct chain · 9% helix, 37% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protein NP24	protein	207	9% helix, 37% strand	P12670

Ligands and binding sites

CL · Chloride ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	85	0.33	0.74	19	empty

Modifications

Observed in the structure: 8 disulfide (disulfide).

Compared structures

2I0W · Crystal structure analysis of NP24-I, a thaumatin-like protein · the same entry in another collection · chain A against A, TM-score 1.00
P12670 · AlphaFold monomer V2.0 prediction for protein NP24 (P12670) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P12670
Elsewhere: RCSB PDB 2I0W · PDBe 2I0W · UniProt P12670

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