MolNFT v1 · #39428 · DNA
Ruthenium hexammine ion interactions with Z-DNA
2HTO · DNA (5'-D(*DCP*DGP*DCP*DGP*DCP*DA)-3'): “Ruthenium hexammine ion interactions with Z-DNA”. X-ray diffraction, 1 ligand (NRU). MolNFT v1 #39428 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2HTO
- Type
- DNA
- Length
- 12 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*DCP*DGP*DCP*DGP*DCP*DA)-3'); DNA (5'-D(*DTP*DGP*DCP*DGP*DCP*DG)-3')
- Ligands
- NRU
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA (5'-D(*DCP*DGP*DCP*DGP*DCP*DA)-3') | dna | 6 | — | — |
| B | DNA (5'-D(*DTP*DGP*DCP*DGP*DCP*DG)-3') | dna | 6 | — | — |
Ligands and binding sites
- NRU · Ruthenium (III) hexaamine ion · ligand · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 314 Ų buried · 24 hydrogen bonds · nucleic-nucleic
Compared structures
- 2HTO · Ruthenium hexammine ion interactions with Z-DNA · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2HTO · PDBe 2HTO
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.