MolNFT v1 · #39415 · protein
Crystal structure of a putative mutarotase (yead) from salmonella typhimurium in orthorhombic form
2HTA · Putative enzyme related to aldose 1-epimerase: “Crystal structure of a putative mutarotase (yead) from salmonella typhimurium in orthorhombic form”. X-ray diffraction, 1 ligand (SO4), 4 pockets (best druggability 0.42). MolNFT v1…
- PDB
- 2HTA
- Type
- protein
- Length
- 594 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative enzyme related to aldose 1-epimerase
- EC
- 5.1.3.-
- UniProt
- Q8ZPV9
- Ligands
- SO4
- Pockets
- 4 · best druggability 0.42
Structure
x-ray diffraction · 1 distinct chain · 11% helix, 49% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Putative enzyme related to aldose 1-epimerase (EC 5.1.3.-) | protein | 297 | 11% helix, 49% strand | Q8ZPV9 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 164 | 0.42 | 0.74 | 26 | empty |
| 2 | 126 | 0.41 | 0.75 | 22 | empty |
| 3 | 79 | 0.36 | 0.76 | 22 | empty |
| 4 | 114 | 0.36 | 0.73 | 22 | empty |
Interfaces
1 interface between chains.
- A–B · 503 Ų buried · 11 hydrogen bonds · protein-protein
Compared structures
- 2HTA · Crystal Structure of a putative mutarotase (YeaD) from Salmonella typhimurium in… · the same entry in another collection · chain A against A, TM-score 1.00
- Q8ZPV9 · AlphaFold monomer V2.0 prediction for putative glucose-6-phosphate 1-epimerase (Q8ZPV9) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8ZPV9
- Elsewhere: RCSB PDB 2HTA · PDBe 2HTA · UniProt Q8ZPV9
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