MolNFT v1 · #39203 · DNA
Solution structure of reduced interstrand cross-link arising from S- alpha-methyl-gamma-oh-1,N2-propano-2'-deoxyguanosine in the 5'-cpg-3' DNA sequence
2HMR · DNA dodecamer with interstrand cross-link: “Solution structure of reduced interstrand cross-link arising from S…”. Solution nmr. MolNFT v1 #39203 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2HMR
- Type
- DNA
- Length
- 24 nucleotides
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA dodecamer with interstrand cross-link
Structure
solution nmr · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA dodecamer with interstrand cross-link | dna | 12 | — | — |
| B | DNA dodecamer with interstrand cross-link | dna | 12 | — | — |
Interfaces
1 interface between chains.
- A–B · 564 Ų buried · 60 hydrogen bonds · nucleic-nucleic
Modifications
Observed in the structure: 2 modified (nucleotide modification).
Compared structures
- 2HMR · Solution structure of reduced interstrand cross-link arising from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2HMR · PDBe 2HMR
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