MolNFT v1 · #38678 · protein
Crystal structure of mcherry
2H5Q: “Crystal structure of mcherry”. X-ray diffraction, 1 ligand (CH6), 2 pockets (best druggability 0.68). MolNFT v1 #38678 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2H5Q
- Type
- protein
- Length
- 217 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Mcherry
- Ligands
- CH6
- Pockets
- 2 · best druggability 0.68
Structure
x-ray diffraction · 1 distinct chain · 6% helix, 58% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Mcherry | protein | 217 | 6% helix, 58% strand | — |
Ligands and binding sites
- CH6 · {(4Z)-2-[(1S)-1-amino-3-(methylsulfanyl)propyl]-4-[(4-hydroxyphenyl)methylidene]-5-oxo-4,5-dihydro-1H-imidazol-1-yl}acetic acid · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 53 | 0.68 | 0.97 | 21 | CH6 |
| 2 | 62 | 0.36 | 0.78 | 21 | empty |
Modifications
Observed in the structure: 2 cofactor (chromophore).
Compared structures
- 2H5Q · Crystal structure of mCherry · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2H5Q · PDBe 2H5Q
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