MolNFT v1 · #38444 · protein
Complex of equine apoferritin with the H-diaziflurane photolabeling reagent
2GYD · Ferritin L subunit: “Complex of equine apoferritin with the H-diaziflurane photolabeling reagent”. X-ray diffraction, 2 ligands (DFE, CD), 1 pocket (best druggability 0.30). MolNFT v1 #38444 on GenesisL1: 3D structure, binding sites…
- PDB
- 2GYD
- Type
- protein
- Length
- 168 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ferritin L subunit
- Ligands
- DFE, CD
- Pockets
- 1 · best druggability 0.30
Structure
x-ray diffraction · 1 distinct chain · 76% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ferritin L subunit | protein | 168 | 76% helix, 0% strand | — |
Ligands and binding sites
- DFE · 2-(1,1-difluoroethoxy)-1,1,1-trifluoroethane · ligand · chains A
- CD · Cadmium ion · metal · 7 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 51 | 0.30 | 0.76 | 18 | empty |
Modifications
Observed in the structure: 1 covalent (covalent ligand).
Compared structures
- 2GYD · Complex of equine apoferritin with the H-diaziflurane photolabeling reagent · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2GYD · PDBe 2GYD
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