MolNFT v1 · #38418 · protein

Crystal structure of the salmonella spvb atr domain

2GWM · 65 kda virulence protein: “Crystal structure of the salmonella spvb atr domain”. X-ray diffraction, 1 ligand (SO4), 1 pocket (best druggability 0.57). MolNFT v1 #38418 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 2GWM
Type: protein
Length: 200 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 65 kda virulence protein
UniProt: P55220
Ligands: SO4
Pockets: 1 · best druggability 0.57

Structure

x-ray diffraction · 1 distinct chain · 38% helix, 22% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	65 kda virulence protein	protein	200	38% helix, 22% strand	P55220

Ligands and binding sites

SO4 · Sulfate ion · ion · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	337	0.57	0.76	47	empty

Compared structures

2GWM · Crystal structure of the Salmonella SpvB ATR Domain · the same entry in another collection · chain A against A, TM-score 1.00
P55220 · AlphaFold monomer V2.0 prediction for MONO(ADP-RIBOSYL)TRANSFERASE spvb (P55220) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P55220
Elsewhere: RCSB PDB 2GWM · PDBe 2GWM · UniProt P55220

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.