MolNFT v1 · #38297 · protein
E. COLI heptosyltransferase waac.
2GT1 · Lipopolysaccharide heptosyltransferase-1: “E. COLI heptosyltransferase waac.”. X-ray diffraction, 8 pockets (best druggability 0.63). MolNFT v1 #38297 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2GT1
- Type
- protein
- Length
- 626 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lipopolysaccharide heptosyltransferase-1
- Pockets
- 8 · best druggability 0.63
Structure
x-ray diffraction · 2 distinct chains · 43% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lipopolysaccharide heptosyltransferase-1 | protein | 323 | 43% helix, 18% strand | — |
| B | Lipopolysaccharide heptosyltransferase-1 | protein | 303 | 43% helix, 18% strand | — |
Pockets
8 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 339 | 0.63 | 0.79 | 37 | empty |
| 2 | 281 | 0.61 | 0.80 | 40 | empty |
| 3 | 379 | 0.56 | 0.75 | 57 | empty |
| 4 | 131 | 0.47 | 0.78 | 22 | empty |
| 5 | 146 | 0.47 | 0.77 | 26 | empty |
Interfaces
1 interface between chains.
- A–B · 593 Ų buried · 11 hydrogen bonds · protein-protein
Compared structures
- 2GT1 · E. coli heptosyltransferase WaaC. · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2GT1 · PDBe 2GT1
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