MolNFT v1 · #38257 · protein
Crystal structure of lpqw
2GRV: “Crystal structure of lpqw”. X-ray diffraction, 20 pockets (best druggability 0.83). MolNFT v1 #38257 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2GRV
- Type
- protein
- Length
- 1,536 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lpqw
- UniProt
- Q1TT16
- Pockets
- 20 · best druggability 0.83
Structure
x-ray diffraction · 3 distinct chains · 29% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lpqw | protein | 516 | 29% helix, 26% strand | Q1TT16 |
| B | Lpqw | protein | 509 | 29% helix, 26% strand | Q1TT16 |
| C | Lpqw | protein | 511 | 30% helix, 26% strand | Q1TT16 |
Pockets
20 pockets found on a 1 Å grid, 11 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 224 | 0.83 | 0.96 | 38 | empty |
| 2 | 227 | 0.81 | 0.95 | 36 | empty |
| 3 | 447 | 0.77 | 0.86 | 71 | empty |
| 4 | 847 | 0.76 | 0.80 | 89 | empty |
| 5 | 233 | 0.61 | 0.81 | 25 | empty |
Interfaces
1 interface between chains.
- A–C · 1046 Ų buried · 20 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 3 disulfide (disulfide).
Compared structures
- 2GRV · Crystal Structure of LpqW · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q1TT16
- Elsewhere: RCSB PDB 2GRV · PDBe 2GRV · UniProt Q1TT16
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