MolNFT v1 · #37978 · protein

1.6 ångström structure of plastocyanin from anabaena variabilis

2GIM: “1.6 ångström structure of plastocyanin from anabaena variabilis”. X-ray diffraction, 1 ligand (CU), 1 pocket (best druggability 0.47). MolNFT v1 #37978 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 2GIM
Type: protein
Length: 212 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Plastocyanin
UniProt: P0C178
Ligands: CU
Pockets: 1 · best druggability 0.47

Structure

x-ray diffraction · 1 distinct chain · 9% helix, 37% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, C	Plastocyanin	protein	106	9% helix, 37% strand	P0C178

Ligands and binding sites

CU · Copper (II) ion · metal · 2 copies · chains A, C

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	211	0.47	0.74	28	empty

Interfaces

1 interface between chains.

A–C · 274 Å² buried · 4 hydrogen bonds · protein-protein

Compared structures

2GIM · 1.6 Angstrom structure of plastocyanin from Anabaena variabilis · the same entry in another collection · chain A against A, TM-score 1.00
P0C178 · AlphaFold monomer V2.0 prediction for plastocyanin (P0C178) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0C178
Elsewhere: RCSB PDB 2GIM · PDBe 2GIM · UniProt P0C178

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