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MolNFT v1 · #37823 · protein

4-(aminoalkylamino)-3-benzimidazole-quinolinones as potent CHK1 inhibitors

2GDO · SERINE/THREONINE-protein kinase CHK1: “4-(aminoalkylamino)-3-benzimidazole-quinolinones as potent CHK1 inhibitors”. X-ray diffraction, 2 ligands (12C, SO4), 2 pockets (best druggability 0.68). MolNFT v1 #37823 on GenesisL1: 3D…

PDB
2GDO
Type
protein
Length
269 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
SERINE/THREONINE-protein kinase CHK1
EC
2.7.1.37
UniProt
O14757
Ligands
12C, SO4
Pockets
2 · best druggability 0.68

Structure

x-ray diffraction · 1 distinct chain · 30% helix, 20% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ASERINE/THREONINE-protein kinase CHK1 (EC 2.7.1.37)protein26930% helix, 20% strandO14757

Ligands and binding sites

  • 12C · 4-[(3S)-1-azabicyclo[2.2.2]oct-3-ylamino]-3-(1H-benzimidazol-2-yl)-6-chloroquinolin-2(1H)-one · ligand · chains A
  • SO4 · Sulfate ion · ion · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
12890.680.833912C
2620.360.7814empty

Compared structures

  • 2GDO · 4-(Aminoalkylamino)-3-Benzimidazole-Quinoli s As Potent CHK1 Inhibitors · the same entry in another collection · chain A against A, TM-score 1.00
  • 2C3L · Identification of a buried pocket for potent and selective inhibition of CHK1: prediction… · a predicted model of the same protein · chain A against A, TM-score 0.97
  • 2C3K · Identification of a buried pocket for potent and selective inhibition of CHK1: prediction… · a predicted model of the same protein · chain A against A, TM-score 0.96
  • O14757 · AlphaFold monomer V2.0 prediction for SERINE/THREONINE-protein kinase CHK1 (O14757) · a predicted model of the same protein · chain A against A, TM-score 0.95
  • 2C3J · Identification of a buried pocket for potent and selective inhibition of CHK1: prediction… · a predicted model of the same protein · chain A against A, TM-score 0.94

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