MolNFT v1 · #37819 · protein
Delta-62 rada recombinase in complex with AMP-pnp and magnesium
2GDJ · DNA repair and recombination protein rada: “Delta-62 rada recombinase in complex with AMP-pnp and magnesium”. X-ray diffraction, 2 ligands (ANP, MG). MolNFT v1 #37819 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2GDJ
- Type
- protein
- Length
- 237 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA repair and recombination protein rada
- UniProt
- O73948
- Ligands
- ANP, MG
Structure
x-ray diffraction · 1 distinct chain · 38% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA repair and recombination protein rada | protein | 237 | 38% helix, 27% strand | O73948 |
Ligands and binding sites
- ANP · Phosphoaminophosphonic acid-adenylate ester · ligand · chains A
- MG · Magnesium ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 2GDJ · Delta-62 RADA recombinase in complex with AMP-PNP and magnesium · the same entry in another collection · chain A against A, TM-score 1.00
- O73948 · AlphaFold monomer V2.0 prediction for DNA repair and recombination protein rada (O73948) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O73948
- Elsewhere: RCSB PDB 2GDJ · PDBe 2GDJ · UniProt O73948
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