MolNFT v1 · #37684 · protein

Crystal structure of succinylglutamate desuccinylase from vibrio cholerae, northeast structural genomics target VCR20

2G9D: “Crystal structure of succinylglutamate desuccinylase from vibrio cholerae, northeast structural genomics…”. X-ray diffraction, 2 pockets (best druggability 0.71). MolNFT v1 #37684 on GenesisL1: 3D structure, binding sites and…

PDB: 2G9D
Type: protein
Length: 340 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Succinylglutamate desuccinylase
EC: 3.1.-.-
UniProt: Q9KSL4
Pockets: 2 · best druggability 0.71

Structure

x-ray diffraction · 1 distinct chain · 20% helix, 25% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Succinylglutamate desuccinylase (EC 3.1.-.-)	protein	340	20% helix, 25% strand	Q9KSL4

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	291	0.71	0.85	40	empty
2	115	0.37	0.74	24	empty

Modifications

Observed in the structure: 11 modified (engineered).

Compared structures

2G9D · Crystal Structure of Succinylglutamate desuccinylase from Vibrio cholerae, Northeast… · the same entry in another collection · chain A against A, TM-score 1.00
Q9KSL4 · AlphaFold monomer V2.0 prediction for succinylglutamate desuccinylase (Q9KSL4) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9KSL4
Elsewhere: RCSB PDB 2G9D · PDBe 2G9D · UniProt Q9KSL4

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