MolNFT v1 · #37479 · protein
Structure of S65G Y66S GFP variant after spontaneous peptide hydrolysis
2G2S · Green fluorescent protein: “Structure of S65G Y66S GFP variant after spontaneous peptide hydrolysis”. X-ray diffraction, 1 ligand (MG). MolNFT v1 #37479 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2G2S
- Type
- protein
- Length
- 229 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Green fluorescent protein
- UniProt
- P42212
- Ligands
- MG
Structure
x-ray diffraction · 2 distinct chains · 14% helix, 51% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Green fluorescent protein | protein | 64 | 27% helix, 48% strand | P42212 |
| B | Green fluorescent protein | protein | 165 | 10% helix, 52% strand | P42212 |
Ligands and binding sites
- MG · Magnesium ion · metal · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 2326 Ų buried · 41 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 1 modified (nonstandard).
Compared structures
- 2G2S · Structure of S65G Y66S GFP variant after spontaneous peptide hydrolysis · the same entry in another collection · chain A against A, TM-score 1.00
- P42212 · AlphaFold monomer V2.0 prediction for green fluorescent protein (P42212) · a predicted model of the same protein · chain B against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P42212
- Elsewhere: RCSB PDB 2G2S · PDBe 2G2S · UniProt P42212
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