MolNFT v1 · #37456 · DNA

X-ray structure of the oligonucleotide sequence D(AAATTT)

2G1Z · 5'-D(*AP*AP*AP*TP*TP*T)-3': “X-ray structure of the oligonucleotide sequence D(AAATTT)”. X-ray diffraction. MolNFT v1 #37456 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 2G1Z
Type: DNA
Length: 18 nucleotides
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 5'-D(*AP*AP*AP*TP*TP*T)-3'

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, C, B	5'-D(APAPAPTPTPT)-3'	dna	6	—	—

Interfaces

3 interfaces between chains.

A–C · 249 Å² buried · 22 hydrogen bonds · nucleic-nucleic
C–B · 142 Å² buried · 2 hydrogen bonds · nucleic-nucleic
A–B · 35 Å² buried · 0 hydrogen bonds · nucleic-nucleic

Compared structures

2G1Z · X-ray structure of the oligonucleotide sequence d(AAATTT) · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 2G1Z · PDBe 2G1Z

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