MolNFT v1 · #37276 · protein

Diheme cytochrome C from rhodobacter sphaeroides

2FW5 · Dhc, diheme cytochrome C: “Diheme cytochrome C from rhodobacter sphaeroides”. X-ray diffraction, 1 ligand (HEC), 1 pocket (best druggability 0.73). MolNFT v1 #37276 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 2FW5
Type: protein
Length: 125 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Dhc, diheme cytochrome C
UniProt: Q3J4W3
Ligands: HEC
Pockets: 1 · best druggability 0.73

Structure

x-ray diffraction · 1 distinct chain · 47% helix, 2% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Dhc, diheme cytochrome C	protein	125	47% helix, 2% strand	Q3J4W3

Ligands and binding sites

HEC · Heme C · ligand · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	312	0.73	0.85	49	HEC

Modifications

Observed in the structure: 4 cofactor (heme c attachment).

Compared structures

2FW5 · Diheme cytochrome c from Rhodobacter sphaeroides · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q3J4W3
Elsewhere: RCSB PDB 2FW5 · PDBe 2FW5 · UniProt Q3J4W3

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