MolNFT v1 · #3726 · protein
NMR solution structure of the capsid protein from rous sarcoma virus
1D1D · Protein (capsid protein): “NMR solution structure of the capsid protein from rous sarcoma virus”. Solution nmr, 2 pockets (best druggability 0.42). MolNFT v1 #3726 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1D1D
- Type
- protein
- Length
- 220 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein (capsid protein)
- UniProt
- O92954
- Pockets
- 2 · best druggability 0.42
Structure
solution nmr · 1 distinct chain · 58% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein (capsid protein) | protein | 220 | 58% helix, 0% strand | O92954 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 160 | 0.42 | 0.73 | 27 | empty |
| 2 | 87 | 0.33 | 0.73 | 20 | empty |
Compared structures
- 1D1D · NMR solution structure of the capsid protein from rous sarcoma virus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O92954
- Elsewhere: RCSB PDB 1D1D · PDBe 1D1D · UniProt O92954
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