MolNFT v1 · #3721 · DNA

Solution conformation of purine-pyrimidine DNA octamers using nuclear magnetic resonance, restrained molecular dynamics and noe-based refinement

1D18 · DNA (5'-D(*CP*AP*TP*GP*CP*AP*TP*G)-3'): “Solution conformation of purine-pyrimidine DNA octamers using nuclear magnetic resonance, restrained…”. Solution nmr. MolNFT v1 #3721 on GenesisL1: 3D structure, binding sites and pockets in…

PDB: 1D18
Type: DNA
Length: 16 nucleotides
Chains: 2
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: DNA (5'-D(*CP*AP*TP*GP*CP*AP*TP*G)-3')

Structure

solution nmr · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	DNA (5'-D(CPAPTPGPCPAPTPG)-3')	dna	8	—	—

Interfaces

1 interface between chains.

A–B · 399 Å² buried · 35 hydrogen bonds · nucleic-nucleic

Compared structures

1D18 · Solution conformation of purine-pyrimidine DNA octamers using nuclear magnetic resonance… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 1D18 · PDBe 1D18

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