MolNFT v1 · #37078 · protein
Rada recombinase in complex with AMP-pnp and high concentration of K+
2FPM · DNA repair and recombination protein rada: “Rada recombinase in complex with AMP-pnp and high concentration of K+”. X-ray diffraction, 3 ligands (ANP, K, MG), 3 pockets (best druggability 0.38). MolNFT v1 #37078 on GenesisL1: 3D…
- PDB
- 2FPM
- Type
- protein
- Length
- 311 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA repair and recombination protein rada
- UniProt
- O73948
- Ligands
- ANP, K, MG
- Pockets
- 3 · best druggability 0.38
Structure
x-ray diffraction · 1 distinct chain · 42% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA repair and recombination protein rada | protein | 311 | 42% helix, 22% strand | O73948 |
Ligands and binding sites
- ANP · Phosphoaminophosphonic acid-adenylate ester · ligand · chains A
- K · Potassium ion · metal · 3 copies · chains A
- MG · Magnesium ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 112 | 0.38 | 0.75 | 17 | empty |
| 2 | 56 | 0.33 | 0.77 | 13 | empty |
| 3 | 58 | 0.31 | 0.76 | 12 | empty |
Compared structures
- 2FPM · RadA recombinase in complex with AMP-PNP and high concentration of K+ · the same entry in another collection · chain A against A, TM-score 1.00
- O73948 · AlphaFold monomer V2.0 prediction for DNA repair and recombination protein rada (O73948) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O73948
- Elsewhere: RCSB PDB 2FPM · PDBe 2FPM · UniProt O73948
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