MolNFT v1 · #37007 · protein
Thermotoga maritima ribose binding protein unliganded form
2FN9 · Ribose ABC transporter, periplasmic ribose-binding protein: “Thermotoga maritima ribose binding protein unliganded form”. X-ray diffraction, 3 pockets (best druggability 0.64). MolNFT v1 #37007 on GenesisL1: 3D structure, binding…
- PDB
- 2FN9
- Type
- protein
- Length
- 560 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ribose ABC transporter, periplasmic ribose-binding protein
- Pockets
- 3 · best druggability 0.64
Structure
x-ray diffraction · 1 distinct chain · 44% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Ribose ABC transporter, periplasmic ribose-binding protein | protein | 280 | 44% helix, 22% strand | — |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 443 | 0.64 | 0.77 | 42 | empty |
| 2 | 359 | 0.56 | 0.75 | 35 | empty |
| 3 | 65 | 0.29 | 0.74 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 127 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 2FN9 · Thermotoga maritima Ribose Binding Protein Unliganded Form · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2FN9 · PDBe 2FN9
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