MolNFT v1 · #36753 · protein

Novel X-ray structure of the ykuj protein from bacillus subtilis. northeast structural genomics target SR360.

2FFG: “Novel X-ray structure of the ykuj protein from bacillus subtilis. northeast structural genomics target SR360.”. X-ray diffraction, 1 pocket (best druggability 0.48). MolNFT v1 #36753 on GenesisL1: 3D structure, binding sites and…

PDB: 2FFG
Type: protein
Length: 159 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ykuj
UniProt: O34588
Pockets: 1 · best druggability 0.48

Structure

x-ray diffraction · 2 distinct chains · 38% helix, 37% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Ykuj	protein	80	40% helix, 40% strand	O34588
B	Ykuj	protein	79	37% helix, 34% strand	O34588

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	218	0.48	0.75	33	empty

Interfaces

1 interface between chains.

A–B · 315 Å² buried · 5 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 6 modified (engineered).

Compared structures

2FFG · Novel x-ray structure of the YkuJ protein from Bacillus subtilis. Northeast Structural… · the same entry in another collection · chain A against A, TM-score 1.00
O34588 · AlphaFold monomer V2.0 prediction for uncharacterized protein ykuj (O34588) · a predicted model of the same protein · chain B against A, TM-score 0.96

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O34588
Elsewhere: RCSB PDB 2FFG · PDBe 2FFG · UniProt O34588

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