MolNFT v1 · #36580 · protein
Complex between the chemotaxis deamidase ched and the chemotaxis phosphatase chec from thermotoga maritima
2F9Z · Chemotaxis protein chec: “Complex between the chemotaxis deamidase ched and the chemotaxis phosphatase chec from thermotoga maritima”. X-ray diffraction, 7 pockets (best druggability 0.52). MolNFT v1 #36580 on GenesisL1: 3D…
- PDB
- 2F9Z
- Type
- protein
- Length
- 691 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Chemotaxis protein chec; Protein (chemotaxis methylation protein)
- UniProt
- Q9X006, Q9X005
- Pockets
- 7 · best druggability 0.52
Structure
x-ray diffraction · 3 distinct chains · 37% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Chemotaxis protein chec | protein | 193 | 46% helix, 30% strand | Q9X006 |
| B | Chemotaxis protein chec | protein | 190 | 40% helix, 24% strand | Q9X006 |
| C, D | Protein (chemotaxis methylation protein) | protein | 154 | 22% helix, 37% strand | Q9X005 |
Pockets
7 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 158 | 0.52 | 0.79 | 25 | empty |
| 2 | 158 | 0.52 | 0.79 | 31 | empty |
| 3 | 60 | 0.46 | 0.83 | 24 | empty |
| 4 | 154 | 0.45 | 0.76 | 29 | empty |
| 5 | 97 | 0.42 | 0.78 | 19 | empty |
Interfaces
3 interfaces between chains.
- A–C · 852 Ų buried · 3 hydrogen bonds · protein-protein
- B–D · 681 Ų buried · 7 hydrogen bonds · protein-protein
- C–D · 257 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 2F9Z · Complex between the chemotaxis deamidase CheD and the chemotaxis phosphatase CheC from… · the same entry in another collection · chain D against D, TM-score 1.00
- Q9X006 · AlphaFold monomer V2.0 prediction for chey-P phosphatase chec (Q9X006) · a predicted model of the same protein · chain B against A, TM-score 0.97
- Q9X005 · AlphaFold monomer V2.0 prediction for chemoreceptor glutamine deamidase ched (Q9X005) · a predicted model of the same protein · chain D against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9X006
- Every structure of UniProt Q9X005
- Elsewhere: RCSB PDB 2F9Z · PDBe 2F9Z · UniProt Q9X006 · UniProt Q9X005
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