MolNFT v1 · #36511 · protein
Crystal structure of molybdenum cofactor biosynthesis protein mog from shewanella oneidensis
2F7Y: “Crystal structure of molybdenum cofactor biosynthesis protein mog from shewanella oneidensis”. X-ray diffraction, 5 pockets (best druggability 0.71). MolNFT v1 #36511 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2F7Y
- Type
- protein
- Length
- 512 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Molybdenum cofactor biosynthesis protein mog
- Pockets
- 5 · best druggability 0.71
Structure
x-ray diffraction · 3 distinct chains · 44% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Molybdenum cofactor biosynthesis protein mog | protein | 173 | 43% helix, 20% strand | — |
| B | Molybdenum cofactor biosynthesis protein mog | protein | 168 | 43% helix, 18% strand | — |
| C | Molybdenum cofactor biosynthesis protein mog | protein | 171 | 44% helix, 20% strand | — |
Pockets
5 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 535 | 0.71 | 0.80 | 45 | empty |
| 2 | 515 | 0.68 | 0.79 | 42 | empty |
| 3 | 413 | 0.62 | 0.77 | 39 | empty |
| 4 | 376 | 0.61 | 0.77 | 39 | empty |
| 5 | 211 | 0.58 | 0.80 | 24 | empty |
Interfaces
3 interfaces between chains.
- A–B · 766 Ų buried · 10 hydrogen bonds · protein-protein
- B–C · 744 Ų buried · 5 hydrogen bonds · protein-protein
- A–C · 729 Ų buried · 7 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 15 modified (engineered).
Compared structures
- 2F7Y · Crystal structure of Molybdenum cofactor biosynthesis protein Mog from Shewanella… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2F7Y · PDBe 2F7Y
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