MolNFT v1 · #3651 · protein
NMR structure of vat-N: the N-terminal domain of vat (vcp-like ATPase of thermoplasma)
1CZ5: “NMR structure of vat-N: the N-terminal domain of vat (vcp-like ATPase of thermoplasma)”. Solution nmr, 4 pockets (best druggability 0.64). MolNFT v1 #3651 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1CZ5
- Type
- protein
- Length
- 185 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Vcp-like ATPase
- UniProt
- O05209
- Pockets
- 4 · best druggability 0.64
Structure
solution nmr · 1 distinct chain · 11% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Vcp-like ATPase | protein | 185 | 11% helix, 30% strand | O05209 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 188 | 0.64 | 0.84 | 30 | empty |
| 2 | 81 | 0.34 | 0.75 | 17 | empty |
| 3 | 63 | 0.33 | 0.77 | 14 | empty |
| 4 | 68 | 0.32 | 0.75 | 15 | empty |
Compared structures
- 1CZ5 · NMR structure of vat-N: the N-terminal domain of vat (vcp-like ATPase of thermoplasma) · the same entry in another collection · chain A against A, TM-score 1.00
- O05209 · AlphaFold monomer V2.0 prediction for vcp-like ATPase (O05209) · a predicted model of the same protein · chain A against A, TM-score 0.71
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O05209
- Elsewhere: RCSB PDB 1CZ5 · PDBe 1CZ5 · UniProt O05209
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