MolNFT v1 · #36509 · protein

Crystal structure of molybdenum cofactor biosynthesis protein mog from shewanella oneidensis

2F7W: “Crystal structure of molybdenum cofactor biosynthesis protein mog from shewanella oneidensis”. X-ray diffraction, 5 pockets (best druggability 0.68). MolNFT v1 #36509 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 2F7W
Type: protein
Length: 519 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Molybdenum cofactor biosynthesis protein mog
Pockets: 5 · best druggability 0.68

Structure

x-ray diffraction · 1 distinct chain · 45% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C	Molybdenum cofactor biosynthesis protein mog	protein	173	45% helix, 21% strand	—

Pockets

5 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	549	0.68	0.78	40	empty
2	445	0.64	0.77	43	empty
3	416	0.64	0.78	40	empty
4	337	0.60	0.77	31	empty
5	210	0.59	0.80	27	empty

Interfaces

3 interfaces between chains.

B–C · 763 Å² buried · 6 hydrogen bonds · protein-protein
A–B · 755 Å² buried · 4 hydrogen bonds · protein-protein
A–C · 722 Å² buried · 8 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 15 modified (engineered).

Compared structures

2F7W · Crystal structure of Molybdenum cofactor biosynthesis protein Mog from Shewanella… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 2F7W · PDBe 2F7W

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