MolNFT v1 · #36303 · protein
Recombinase in complex with AMP-pnp
2F1I · DNA repair and recombination protein rada: “Recombinase in complex with AMP-pnp”. X-ray diffraction, 2 ligands (ANP, MG), 1 pocket (best druggability 0.42). MolNFT v1 #36303 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 2F1I
- Type
- protein
- Length
- 299 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA repair and recombination protein rada
- UniProt
- O73948
- Ligands
- ANP, MG
- Pockets
- 1 · best druggability 0.42
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA repair and recombination protein rada | protein | 299 | 40% helix, 21% strand | O73948 |
Ligands and binding sites
- ANP · Phosphoaminophosphonic acid-adenylate ester · ligand · chains A
- MG · Magnesium ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 78 | 0.42 | 0.79 | 14 | empty |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O73948
- Elsewhere: RCSB PDB 2F1I · PDBe 2F1I · UniProt O73948
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