MolNFT v1 · #36170 · protein + DNA
Solution structure of the HIV-1 nucleocapsid (NCP7(12-55)) complexed with the DNA (-) primer binding site
2EXF · 5'-D(*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*GP*C)-3': “Solution structure of the HIV-1 nucleocapsid (NCP7(12-55)) complexed with the DNA (-) primer binding site”. Solution nmr, 1 ligand (ZN). MolNFT v1 #36170 on GenesisL1: 3D…
- PDB
- 2EXF
- Type
- protein + DNA
- Length
- 58 residues
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-D(*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*GP*C)-3'; Nucleocapsid protein* (nc*)
- UniProt
- P03368
- Ligands
- ZN
Structure
solution nmr · 2 distinct chains · 0% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | 5'-D(*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*GP*C)-3' | dna | 14 | — | — |
| A | Nucleocapsid protein* (nc*) | protein | 44 | 0% helix, 0% strand | P03368 |
Ligands and binding sites
- ZN · Zinc ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- B–A · 845 Ų buried · 30 hydrogen bonds · protein-nucleic
Compared structures
- 2EXF · Solution structure of the HIV-1 nucleocapsid (NCp7(12-55)) complexed with the DNA (-)… · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P03368
- Elsewhere: RCSB PDB 2EXF · PDBe 2EXF · UniProt P03368
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