MolNFT v1 · #36131 · protein

Crystal structure of helicobacter pylori peptide deformylase

2EW7: “Crystal structure of helicobacter pylori peptide deformylase”. X-ray diffraction, 1 ligand (CO), 1 pocket (best druggability 0.49). MolNFT v1 #36131 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 2EW7
Type: protein
Length: 163 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Peptide deformylase
EC: 3.5.1.88
UniProt: Q2L8P7
Ligands: CO
Pockets: 1 · best druggability 0.49

Structure

x-ray diffraction · 1 distinct chain · 33% helix, 28% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Peptide deformylase (EC 3.5.1.88)	protein	163	33% helix, 28% strand	Q2L8P7

Ligands and binding sites

CO · Cobalt (II) ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	123	0.49	0.80	23	empty

Compared structures

2EW7 · Crystal Structure of Helicobacter Pylori peptide deformylase · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q2L8P7
Elsewhere: RCSB PDB 2EW7 · PDBe 2EW7 · UniProt Q2L8P7

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