MolNFT v1 · #36121 · protein
Crystal structure of pumpkin seed globulin
2EVX · 11S globulin beta subunit: “Crystal structure of pumpkin seed globulin”. X-ray diffraction, 1 ligand (MG), 4 pockets (best druggability 0.41). MolNFT v1 #36121 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2EVX
- Type
- protein
- Length
- 382 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 11S globulin beta subunit
- UniProt
- P13744
- Ligands
- MG
- Pockets
- 4 · best druggability 0.41
Structure
x-ray diffraction · 1 distinct chain · 13% helix, 38% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 11S globulin beta subunit | protein | 382 | 13% helix, 38% strand | P13744 |
Ligands and binding sites
- MG · Magnesium ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 102 | 0.41 | 0.77 | 18 | empty |
| 2 | 81 | 0.37 | 0.77 | 21 | empty |
| 3 | 79 | 0.30 | 0.72 | 18 | empty |
| 4 | 64 | 0.28 | 0.73 | 14 | empty |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P13744
- Elsewhere: RCSB PDB 2EVX · PDBe 2EVX · UniProt P13744
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