MolNFT v1 · #36117 · protein
Crystal structure of D48V mutant of human glycolipid transfer protein
2EVT: “Crystal structure of D48V mutant of human glycolipid transfer protein”. X-ray diffraction, 1 pocket (best druggability 0.78). MolNFT v1 #36117 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2EVT
- Type
- protein
- Length
- 201 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glycolipid transfer protein
- UniProt
- Q9NZD2
- Pockets
- 1 · best druggability 0.78
Structure
x-ray diffraction · 1 distinct chain · 68% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glycolipid transfer protein | protein | 201 | 68% helix, 2% strand | Q9NZD2 |
Ligands and binding sites
- HEX · Hexane · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 349 | 0.78 | 0.88 | 39 | HEX |
Compared structures
- 2EVT · Crystal structure of D48V mutant of human Glycolipid Transfer Protein · the same entry in another collection · chain A against A, TM-score 1.00
- Q9NZD2 · AlphaFold monomer V2.0 prediction for glycolipid transfer protein (Q9NZD2) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9NZD2
- Elsewhere: RCSB PDB 2EVT · PDBe 2EVT · UniProt Q9NZD2
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