MolNFT v1 · #35858 · protein

Mutant L121M structure of TTHB049 from thermus thermophilus HB8

2ENU · Alpha-ribazole-5'-phosphate phosphatase: “Mutant L121M structure of TTHB049 from thermus thermophilus HB8”. X-ray diffraction, 5 pockets (best druggability 0.66). MolNFT v1 #35858 on GenesisL1: 3D structure, binding sites and…

PDB: 2ENU
Type: protein
Length: 342 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Alpha-ribazole-5'-phosphate phosphatase
EC: 3.1.3.73
UniProt: Q53WB3
Pockets: 5 · best druggability 0.66

Structure

x-ray diffraction · 1 distinct chain · 36% helix, 17% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73)	protein	171	36% helix, 17% strand	Q53WB3

Ligands and binding sites

GOL · Glycerol · additive · 3 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

5 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	282	0.66	0.82	31	GOL
2	278	0.66	0.82	29	empty
3	63	0.54	0.88	24	empty
4	87	0.50	0.83	18	GOL
5	68	0.30	0.74	16	empty

Interfaces

1 interface between chains.

A–B · 687 Å² buried · 10 hydrogen bonds · protein-protein

Compared structures

2ENU · Mutant L121M structure of TTHB049 from Thermus thermophilus HB8 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q53WB3
Elsewhere: RCSB PDB 2ENU · PDBe 2ENU · UniProt Q53WB3

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