MolNFT v1 · #35553 · RNA
Guanine riboswitch A21U, U75A mutant bound to hypoxanthine
2EES: “Guanine riboswitch A21U, U75A mutant bound to hypoxanthine”. X-ray diffraction, 2 ligands (NCO, HPA), 2 pockets (best druggability 0.72). MolNFT v1 #35553 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2EES
- Type
- RNA
- Length
- 67 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Guanine riboswitch
- Ligands
- NCO, HPA
- Pockets
- 2 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Guanine riboswitch | rna | 67 | — | — |
Ligands and binding sites
- NCO · Cobalt hexammine(iii) · ligand · 12 copies · chains A
- HPA · Hypoxanthine · ligand · chains A
- ACT · Acetate ion · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 894 | 0.72 | 0.77 | 38 | ACT, NCO |
| 2 | 303 | 0.54 | 0.76 | 22 | HPA |
Compared structures
- 2EES · Guanine riboswitch A21U, U75A mutant bound to hypoxanthine · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2EES · PDBe 2EES
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