MolNFT v1 · #35454 · protein
Crystal structure of a hypothetical protein from E. COLI
2EBY · Putative hth-type transcriptional regulator ybaq: “Crystal structure of a hypothetical protein from E. COLI”. X-ray diffraction, 1 ligand (SO4), 1 pocket (best druggability 0.60). MolNFT v1 #35454 on GenesisL1: 3D structure, binding…
- PDB
- 2EBY
- Type
- protein
- Length
- 200 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative hth-type transcriptional regulator ybaq
- UniProt
- P0A9T6
- Ligands
- SO4
- Pockets
- 1 · best druggability 0.60
Structure
x-ray diffraction · 2 distinct chains · 72% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative hth-type transcriptional regulator ybaq | protein | 102 | 72% helix, 0% strand | P0A9T6 |
| B | Putative hth-type transcriptional regulator ybaq | protein | 98 | 72% helix, 0% strand | P0A9T6 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 282 | 0.60 | 0.79 | 30 | SO4 |
Interfaces
1 interface between chains.
- A–B · 1507 Ų buried · 16 hydrogen bonds · protein-protein
Compared structures
- 2EBY · Crystal structure of a hypothetical protein from E. Coli · the same entry in another collection · chain A against A, TM-score 1.00
- P0A9T6 · AlphaFold monomer V2.0 prediction for uncharacterized hth-type transcriptional regulator… · a predicted model of the same protein · chain B against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A9T6
- Elsewhere: RCSB PDB 2EBY · PDBe 2EBY · UniProt P0A9T6
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