MolNFT v1 · #35228 · protein

Structure of AQ2163 protein from aquifex aeolicus

2E55 · Uracil phosphoribosyltransferase: “Structure of AQ2163 protein from aquifex aeolicus”. X-ray diffraction, 1 ligand (SO4), 8 pockets (best druggability 0.89). MolNFT v1 #35228 on GenesisL1: 3D structure, binding sites and pockets in…

PDB: 2E55
Type: protein
Length: 832 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Uracil phosphoribosyltransferase
EC: 2.4.2.9
UniProt: O67914
Ligands: SO4
Pockets: 8 · best druggability 0.89

Structure

x-ray diffraction · 1 distinct chain · 34% helix, 33% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D	Uracil phosphoribosyltransferase (EC 2.4.2.9)	protein	208	34% helix, 33% strand	O67914

Ligands and binding sites

SO4 · Sulfate ion · ion · 4 copies · chains A, B, C, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

8 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	635	0.89	0.93	60	empty
2	287	0.77	0.89	32	SO4
3	304	0.77	0.88	33	SO4
4	272	0.77	0.89	30	SO4
5	313	0.75	0.87	35	SO4

Interfaces

6 interfaces between chains.

B–C · 2259 Å² buried · 32 hydrogen bonds · protein-protein
A–D · 2227 Å² buried · 30 hydrogen bonds · protein-protein
A–B · 1339 Å² buried · 18 hydrogen bonds · protein-protein
C–D · 1321 Å² buried · 20 hydrogen bonds · protein-protein
A–C · 201 Å² buried · 5 hydrogen bonds · protein-protein

Compared structures

2E55 · Structure of AQ2163 protein from Aquifex aeolicus · the same entry in another collection · chain A against A, TM-score 1.00
O67914 · AlphaFold monomer V2.0 prediction for uracil phosphoribosyltransferase (O67914) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O67914
Elsewhere: RCSB PDB 2E55 · PDBe 2E55 · UniProt O67914

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.