MolNFT v1 · #35040 · DNA
A backbone binding DNA complex
2DYW · 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3': “A backbone binding DNA complex”. X-ray diffraction, 3 ligands (A71, A72, NA). MolNFT v1 #35040 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2DYW
- Type
- DNA
- Length
- 24 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'
- Ligands
- A71, A72, NA
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3' | dna | 12 | — | — |
Ligands and binding sites
- A71 · (6-aminohexylamine)(triammine) platinum(ii) complex · ligand · 3 copies · chains A, B
- A72 · Trans-bis(hexylamine)-(diammine) platinum(ii) complex · ligand · chains B
- NA · Sodium ion · metal · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 573 Ų buried · 49 hydrogen bonds · nucleic-nucleic
Compared structures
- 2DYW · A Backbone binding DNA complex · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2DYW · PDBe 2DYW
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