MolNFT v1 · #35016 · protein
Crystal structure of rat heme oxygenase-1 in complex with heme and 2-[2-(4-CHLOROPHENYL)ETHYL]-2-[(1H-imidazol-1-yl) methyl]-1,3-dioxolane
2DY5 · Heme oxygenase 1: “Crystal structure of rat heme oxygenase-1 in complex with heme and…”. X-ray diffraction, 3 ligands (HEM, 224, CL), 1 pocket (best druggability 0.77). MolNFT v1 #35016 on GenesisL1: 3D structure, binding sites and…
- PDB
- 2DY5
- Type
- protein
- Length
- 214 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Heme oxygenase 1
- EC
- 1.14.99.3
- UniProt
- P06762
- Ligands
- HEM, 224, CL
- Pockets
- 1 · best druggability 0.77
Structure
x-ray diffraction · 1 distinct chain · 74% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Heme oxygenase 1 (EC 1.14.99.3) | protein | 214 | 74% helix, 0% strand | P06762 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · chains A
- 224 · 1-({2-[2-(4-chlorophenyl)ethyl]-1,3-dioxolan-2-yl}methyl)-1H-imidazole · ligand · chains A
- CL · Chloride ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 499 | 0.77 | 0.85 | 43 | HEM, 224 |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P06762
- Elsewhere: RCSB PDB 2DY5 · PDBe 2DY5 · UniProt P06762
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