MolNFT v1 · #34987 · protein
The complex structure between the mouse EAP45-glue domain and ubiquitin
2DX5 · Vacuolar protein sorting protein 36: “The complex structure between the mouse EAP45-glue domain and ubiquitin”. X-ray diffraction. MolNFT v1 #34987 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2DX5
- Type
- protein
- Length
- 172 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Vacuolar protein sorting protein 36; Ubiquitin
- UniProt
- Q91XD6, P62990
Structure
x-ray diffraction · 2 distinct chains · 17% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Vacuolar protein sorting protein 36 | protein | 99 | 13% helix, 36% strand | Q91XD6 |
| B | Ubiquitin | protein | 73 | 22% helix, 29% strand | P62990 |
Interfaces
1 interface between chains.
- A–B · 503 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
- 2DX5 · The complex structure between the mouse EAP45-GLUE domain and ubiquitin · the same entry in another collection · chain A against A, TM-score 1.00
- Q91XD6 · AlphaFold monomer V2.0 prediction for vacuolar protein-sorting- associated protein 36… · a predicted model of the same protein · chain A against A, TM-score 0.89
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q91XD6
- Every structure of UniProt P62990
- Elsewhere: RCSB PDB 2DX5 · PDBe 2DX5 · UniProt Q91XD6 · UniProt P62990
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