MolNFT v1 · #34974 · protein
Cu-containing nitrite reductase at pH 8.4 with bound nitrite
2DWS · Copper-containing nitrite reductase: “Cu-containing nitrite reductase at pH 8.4 with bound nitrite”. X-ray diffraction, 2 ligands (CU, NO2), 1 pocket (best druggability 0.40). MolNFT v1 #34974 on GenesisL1: 3D structure, binding…
- PDB
- 2DWS
- Type
- protein
- Length
- 328 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Copper-containing nitrite reductase
- EC
- 1.7.2.1
- UniProt
- Q53239
- Ligands
- CU, NO2
- Pockets
- 1 · best druggability 0.40
Structure
x-ray diffraction · 1 distinct chain · 12% helix, 41% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Copper-containing nitrite reductase (EC 1.7.2.1) | protein | 328 | 12% helix, 41% strand | Q53239 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 76 | 0.40 | 0.79 | 18 | empty |
Compared structures
- 2DWS · Cu-containing nitrite reductase at pH 8.4 with bound nitrite · the same entry in another collection · chain A against A, TM-score 1.00
- Q53239 · AlphaFold monomer V2.0 prediction for copper-containing nitrite reductase (Q53239) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q53239
- Elsewhere: RCSB PDB 2DWS · PDBe 2DWS · UniProt Q53239
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