MolNFT v1 · #34936 · protein
Structure of PH1917 protein with the complex of itp from pyrococcus horikoshii
2DVO · Hypothetical protein PH1917: “Structure of PH1917 protein with the complex of itp from pyrococcus horikoshii”. X-ray diffraction, 2 ligands (ITT, NA), 1 pocket (best druggability 0.64). MolNFT v1 #34936 on GenesisL1: 3D structure…
- PDB
- 2DVO
- Type
- protein
- Length
- 185 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein PH1917
- UniProt
- O59580
- Ligands
- ITT, NA
- Pockets
- 1 · best druggability 0.64
Structure
x-ray diffraction · 1 distinct chain · 42% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical protein PH1917 | protein | 185 | 42% helix, 26% strand | O59580 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 241 | 0.64 | 0.82 | 34 | NA, ITT |
Compared structures
- 2DVO · Structure of PH1917 protein with the complex of ITP from Pyrococcus horikoshii · the same entry in another collection · chain A against A, TM-score 1.00
- O59580 · AlphaFold monomer V2.0 prediction for DITP/XTP pyrophosphatase (O59580) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O59580
- Elsewhere: RCSB PDB 2DVO · PDBe 2DVO · UniProt O59580
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