MolNFT v1 · #34932 · protein

Crystal structure of hypothetical protein from aeropyrum pernix

2DVK · UPF0130 protein APE0816: “Crystal structure of hypothetical protein from aeropyrum pernix”. X-ray diffraction, 1 pocket (best druggability 0.36). MolNFT v1 #34932 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 2DVK
Type: protein
Length: 166 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: UPF0130 protein APE0816
UniProt: Q9YDV3
Pockets: 1 · best druggability 0.36

Structure

x-ray diffraction · 1 distinct chain · 38% helix, 32% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	UPF0130 protein APE0816	protein	166	38% helix, 32% strand	Q9YDV3

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	99	0.36	0.74	22	empty

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

2DVK · Crystal Structure of Hypothetical protein from Aeropyrum pernix · the same entry in another collection · chain A against A, TM-score 1.00
Q9YDV3 · AlphaFold monomer V2.0 prediction for TRNA(PHE) 7-((3-amino-3-carboxy… · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9YDV3
Elsewhere: RCSB PDB 2DVK · PDBe 2DVK · UniProt Q9YDV3

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