MolNFT v1 · #34817 · protein
Crystal structure of the earthworm lectin C-terminal domain mutant
2DRY · 29-kda galactose-binding lectin: “Crystal structure of the earthworm lectin C-terminal domain mutant”. X-ray diffraction, 1 ligand (SO4), 1 pocket (best druggability 0.40). MolNFT v1 #34817 on GenesisL1: 3D structure, binding sites…
- PDB
- 2DRY
- Type
- protein
- Length
- 260 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 29-kda galactose-binding lectin
- UniProt
- O96048
- Ligands
- SO4
- Pockets
- 1 · best druggability 0.40
Structure
x-ray diffraction · 1 distinct chain · 12% helix, 42% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | 29-kda galactose-binding lectin | protein | 130 | 12% helix, 42% strand | O96048 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 4 copies · chains A, B
- PGE · Triethylene glycol · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 78 | 0.40 | 0.79 | 20 | empty |
Interfaces
1 interface between chains.
- A–B · 325 Ų buried · 7 hydrogen bonds · protein-protein
Compared structures
- 2DRY · Crystal structure of the earthworm lectin C-terminal domain mutant · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O96048
- Elsewhere: RCSB PDB 2DRY · PDBe 2DRY · UniProt O96048
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