MolNFT v1 · #34784 · protein
Mutant beta-amylase (W55R) from soy bean
2DQX: “Mutant beta-amylase (W55R) from soy bean”. X-ray diffraction, 6 pockets (best druggability 0.71). MolNFT v1 #34784 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2DQX
- Type
- protein
- Length
- 491 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Beta-amylase
- EC
- 3.2.1.2
- UniProt
- Q42795
- Pockets
- 6 · best druggability 0.71
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Beta-amylase (EC 3.2.1.2) | protein | 491 | 40% helix, 11% strand | Q42795 |
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 685 | 0.71 | 0.78 | 57 | empty |
| 2 | 141 | 0.63 | 0.86 | 37 | empty |
| 3 | 126 | 0.43 | 0.76 | 19 | empty |
| 4 | 73 | 0.41 | 0.80 | 16 | empty |
| 5 | 63 | 0.35 | 0.77 | 19 | empty |
Compared structures
- 2DQX · mutant beta-amylase (W55R) from soy bean · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q42795
- Elsewhere: RCSB PDB 2DQX · PDBe 2DQX · UniProt Q42795
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