MolNFT v1 · #34753 · protein
Crystal structure of the flagellar type III ATPase flii
2DPY · Flagellum-specific ATP synthase: “Crystal structure of the flagellar type III ATPase flii”. X-ray diffraction, 1 ligand (ADP), 11 pockets (best druggability 0.70). MolNFT v1 #34753 on GenesisL1: 3D structure, binding sites and…
- PDB
- 2DPY
- Type
- protein
- Length
- 848 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Flagellum-specific ATP synthase
- EC
- 3.6.3.14
- UniProt
- P26465
- Ligands
- ADP
- Pockets
- 11 · best druggability 0.70
Structure
x-ray diffraction · 2 distinct chains · 35% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Flagellum-specific ATP synthase (EC 3.6.3.14) | protein | 422 | 35% helix, 22% strand | P26465 |
| B | Flagellum-specific ATP synthase (EC 3.6.3.14) | protein | 426 | 36% helix, 22% strand | P26465 |
Ligands and binding sites
- ADP · Adenosine-5'-diphosphate · ligand · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
11 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 680 | 0.70 | 0.77 | 63 | empty |
| 2 | 299 | 0.59 | 0.77 | 30 | empty |
| 3 | 231 | 0.56 | 0.78 | 28 | empty |
| 4 | 381 | 0.55 | 0.74 | 44 | empty |
| 5 | 81 | 0.49 | 0.83 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 641 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P26465
- Elsewhere: RCSB PDB 2DPY · PDBe 2DPY · UniProt P26465
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