MolNFT v1 · #34707 · protein

Solution structure of UPF0301 protein HD_1794

2DO8: “Solution structure of UPF0301 protein HD_1794”. Solution nmr, 3 pockets (best druggability 0.76). MolNFT v1 #34707 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 2DO8
Type: protein
Length: 188 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: UPF0301 protein HD_1794
UniProt: Q7VKS7
Pockets: 3 · best druggability 0.76

Structure

solution nmr · 1 distinct chain · 16% helix, 29% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	UPF0301 protein HD_1794	protein	188	16% helix, 29% strand	Q7VKS7

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	777	0.76	0.80	78	empty
2	56	0.48	0.86	20	empty
3	74	0.31	0.74	16	empty

Compared structures

2DO8 · Solution Structure of UPF0301 protein HD_1794 · the same entry in another collection · chain A against A, TM-score 1.00
Q7VKS7 · AlphaFold monomer V2.0 prediction for UPF0301 protein HD_1794 (Q7VKS7) · a predicted model of the same protein · chain A against A, TM-score 0.71

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q7VKS7
Elsewhere: RCSB PDB 2DO8 · PDBe 2DO8 · UniProt Q7VKS7

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