MolNFT v1 · #34354 · protein
Structure of cinnamycin complexed with lysophosphatidylethanolamine
2DDE · Lantibiotic cinnamycin: “Structure of cinnamycin complexed with lysophosphatidylethanolamine”. Solution nmr, 1 ligand (LSP). MolNFT v1 #34354 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2DDE
- Type
- protein
- Length
- 19 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lantibiotic cinnamycin
- UniProt
- P29827
- Ligands
- LSP
Structure
solution nmr · 1 distinct chain · 0% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lantibiotic cinnamycin | protein | 19 | 0% helix, 0% strand | P29827 |
Ligands and binding sites
- LSP · (7S)-4,7-dihydroxy-10-oxo-3,5,9-trioxa-4-phosphaundecan-1-aminium 4-oxide · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 3 modified, 1 d-amino (nonstandard, D-amino acid).
Compared structures
- 2DDE · Structure of cinnamycin complexed with lysophosphatidylethanolamine · the same entry in another collection · chain A against A, TM-score 1.00
- P29827 · AlphaFold monomer V2.0 prediction for lantibiotic cinnamycin (P29827) · a predicted model of the same protein · chain A against A, TM-score 0.19
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P29827
- Elsewhere: RCSB PDB 2DDE · PDBe 2DDE · UniProt P29827
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