MolNFT v1 · #34323 · protein
Crystal structure of archaeal intron-encoded homing endonuclease I- TSP061I
2DCH · Putative homing endonuclease: “Crystal structure of archaeal intron-encoded homing endonuclease I- TSP061I”. X-ray diffraction, 2 ligands (SO4, CL), 1 pocket (best druggability 0.38). MolNFT v1 #34323 on GenesisL1: 3D structure…
- PDB
- 2DCH
- Type
- protein
- Length
- 204 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative homing endonuclease
- EC
- 3.1.-.-
- UniProt
- Q8J309
- Ligands
- SO4, CL
- Pockets
- 1 · best druggability 0.38
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| X | Putative homing endonuclease (EC 3.1.-.-) | protein | 204 | 40% helix, 28% strand | Q8J309 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 115 | 0.38 | 0.74 | 27 | empty |
Compared structures
- 2DCH · Crystal structure of archaeal intron-encoded homing endonuclease I-Tsp061I · the same entry in another collection · chain X against X, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8J309
- Elsewhere: RCSB PDB 2DCH · PDBe 2DCH · UniProt Q8J309
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