MolNFT v1 · #34310 · protein
Structure of PH1012 protein from pyrococcus horikoshii OT3
2DC4 · 165AA long hypothetical protein: “Structure of PH1012 protein from pyrococcus horikoshii OT3”. X-ray diffraction, 1 ligand (CL), 2 pockets (best druggability 0.60). MolNFT v1 #34310 on GenesisL1: 3D structure, binding sites and…
- PDB
- 2DC4
- Type
- protein
- Length
- 328 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 165AA long hypothetical protein
- UniProt
- O58740
- Ligands
- CL
- Pockets
- 2 · best druggability 0.60
Structure
x-ray diffraction · 1 distinct chain · 26% helix, 47% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | 165AA long hypothetical protein | protein | 164 | 26% helix, 47% strand | O58740 |
Ligands and binding sites
- CL · Chloride ion · ion · 5 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 232 | 0.60 | 0.80 | 42 | CL |
| 2 | 181 | 0.59 | 0.81 | 28 | CL |
Interfaces
1 interface between chains.
- A–B · 890 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 2DC4 · Structure of PH1012 protein from Pyrococcus Horikoshii OT3 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O58740
- Elsewhere: RCSB PDB 2DC4 · PDBe 2DC4 · UniProt O58740
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