MolNFT v1 · #34306 · protein
Crystal structure of amidase
2DC0 · Probable amidase: “Crystal structure of amidase”. X-ray diffraction, 10 pockets (best druggability 0.70). MolNFT v1 #34306 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2DC0
- Type
- protein
- Length
- 868 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Probable amidase
- Pockets
- 10 · best druggability 0.70
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Probable amidase | protein | 434 | 41% helix, 17% strand | — |
Pockets
10 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 345 | 0.70 | 0.83 | 29 | empty |
| 2 | 186 | 0.60 | 0.82 | 29 | empty |
| 3 | 183 | 0.58 | 0.81 | 32 | empty |
| 4 | 108 | 0.47 | 0.79 | 20 | empty |
| 5 | 132 | 0.45 | 0.77 | 23 | empty |
Interfaces
1 interface between chains.
- A–B · 1301 Ų buried · 12 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 modified (engineered).
Compared structures
- 2DC0 · Crystal structure of amidase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2DC0 · PDBe 2DC0
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