MolNFT v1 · #34298 · protein
Crystal structure of a hypothetical protein TTHC002 from thermus thermophilus HB8
2DBS: “Crystal structure of a hypothetical protein TTHC002 from thermus thermophilus HB8”. X-ray diffraction, 2 pockets (best druggability 0.43). MolNFT v1 #34298 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2DBS
- Type
- protein
- Length
- 162 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein TTHC002
- UniProt
- Q5SGN2
- Pockets
- 2 · best druggability 0.43
Structure
x-ray diffraction · 2 distinct chains · 35% helix, 32% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical protein TTHC002 | protein | 80 | 35% helix, 33% strand | Q5SGN2 |
| B | Hypothetical protein TTHC002 | protein | 82 | 34% helix, 32% strand | Q5SGN2 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 126 | 0.43 | 0.77 | 27 | empty |
| 2 | 84 | 0.38 | 0.77 | 22 | empty |
Interfaces
1 interface between chains.
- A–B · 1362 Ų buried · 18 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 modified (engineered).
Compared structures
- 2DBS · Crystal structure of a hypothetical protein TTHC002 from Thermus thermophilus HB8 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5SGN2
- Elsewhere: RCSB PDB 2DBS · PDBe 2DBS · UniProt Q5SGN2
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