MolNFT v1 · #34221 · protein
Solution structure of the arfgap domain of human rip
2D9L · Nucleoporin-like protein rip: “Solution structure of the arfgap domain of human rip”. Solution nmr, 1 ligand (ZN), 1 pocket (best druggability 0.48). MolNFT v1 #34221 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2D9L
- Type
- protein
- Length
- 134 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Nucleoporin-like protein rip
- UniProt
- P52594
- Ligands
- ZN
- Pockets
- 1 · best druggability 0.48
Structure
solution nmr · 1 distinct chain · 37% helix, 6% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nucleoporin-like protein rip | protein | 134 | 37% helix, 6% strand | P52594 |
Ligands and binding sites
- ZN · Zinc ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 70 | 0.48 | 0.83 | 18 | empty |
Compared structures
- 2D9L · Solution structure of the ArfGap domain of human RIP · the same entry in another collection · chain A against A, TM-score 1.00
- P52594 · AlphaFold monomer V2.0 prediction for arf-gap domain and fg repeat- containing protein 1… · a predicted model of the same protein · chain A against A, TM-score 0.87
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P52594
- Elsewhere: RCSB PDB 2D9L · PDBe 2D9L · UniProt P52594
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